Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs61552468 chr1:59090207 C/T 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs61604825 chr19:9726998 C/A 4.25E-14 289 21.97 19.83 3.33 KM Plot
CESC rs61631359 chr8:26915695 A/AT 7.45E-5 291 15.7 21.2 26.63 KM Plot
CESC rs61730367 chr3:100368546 A/G 1.32E-5 293 22.83 19.35 12.05 KM Plot
CESC rs61742817 chr16:17449230 G/T 0 287 21.2 27.48 2.63 KM Plot
CESC rs61859068 chr10:88163596 A/G 2.83E-14 293 3.33 24.3 21.13 KM Plot
CESC rs61860399 chr10:81720665 C/T 1.6E-8 293 24.63 16.55 2.62 KM Plot
CESC rs61860400 chr10:81723427 T/C 4.01E-9 297 25.17 16.42 2.62 KM Plot
CESC rs61860412 chr10:81728486 G/A 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs61860417 chr10:81734727 C/T 1.12E-8 298 24.77 16.85 2.62 KM Plot
CESC rs61860420 chr10:81739379 G/A 3.45E-9 297 25.17 16.42 2.62 KM Plot
CESC rs61860421 chr10:81743399 C/T 3.45E-9 297 25.17 16.42 2.62 KM Plot
CESC rs61883508 chr11:43319878 A/C 3.21E-5 286 20.73 22.4 19.05 KM Plot
CESC rs61922023 chr12:12485555 G/A 0 296 22.83 20.67 0.47 KM Plot
CESC rs61922024 chr12:12485881 C/A 0 296 22.83 20.67 0.47 KM Plot